3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01883

Details:

PFam ID : PF01883

PFam Domain Description : Domain of unknown function DUF59

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 1908

Average sequence length: 73.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01883	A6VVJ6_MARMS_4_68	40.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01883	D1C227_SPHTD_6_72	100

Sequence based PCA Plot of the family - PF01883 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=63 Length=8
Motif3 Start=19 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay