3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01881

Details:

PFam ID : PF01881

PFam Domain Description : CRISPR associated protein Cas6

Number of Sequence in 50% Dataset : 142

Number of Sequence in Full Dataset : 280

Average sequence length: 147.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01881	B9L1B5_THERP_196_267	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01881	E3CYI3_9BACT_97_271	99.6

Sequence based PCA Plot of the family - PF01881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay