3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01880

Details:

PFam ID : PF01880

PFam Domain Description : Desulfoferrodoxin

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 332

Average sequence length: 92.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01880	C4ZHH6_EUBR3_2_51	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01880	D7E9D2_METEZ_18_141	100

Sequence based PCA Plot of the family - PF01880 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=7 Length=8
Motif3 Start=33 Length=14
Motif4 Start=95 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay