3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01878

Details:

PFam ID : PF01878

PFam Domain Description : EVE domain

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 611

Average sequence length: 138.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01878	A8LMB8_DINSH_3_149	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01878	D7E6N8_METEZ_2_147	97.0

Sequence based PCA Plot of the family - PF01878 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=102 Length=8
Motif2 Start=133 Length=8
Motif3 Start=124 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay