3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01875

Details:

PFam ID : PF01875

PFam Domain Description : Memo-like protein

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 454

Average sequence length: 264.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01875	D5GBE6_TUBMM_5_325	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01875	D5GBE6_TUBMM_5_325	100

Sequence based PCA Plot of the family - PF01875 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=96 Length=11
Motif2 Start=313 Length=8
Motif3 Start=48 Length=8
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay