3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01873

Details:

PFam ID : PF01873

PFam Domain Description : Domain found in IF2B/IF5

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 313

Average sequence length: 121.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01873	E3KIX0_PUCGT_39_95	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01873	F2HHT7_9CRYP_20_151	100

Sequence based PCA Plot of the family - PF01873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay