3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01871

Details:

PFam ID : PF01871

PFam Domain Description : AMMECR1

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 489

Average sequence length: 168.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01871	C0D165_9CLOT_1_95	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01871	C5KMU7_9ALVE_32_234	100

Sequence based PCA Plot of the family - PF01871 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=1 Length=8
Motif3 Start=121 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay