3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01869

Details:

PFam ID : PF01869

PFam Domain Description : BadF/BadG/BcrA/BcrD ATPase family

Number of Sequence in 50% Dataset : 321

Number of Sequence in Full Dataset : 1592

Average sequence length: 260.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01869	E2LX66_MONPE_14_157	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01869	Q2W5D2_MAGSA_5_424	99.8

Sequence based PCA Plot of the family - PF01869 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=167 Length=8
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay