3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01868

Details:

PFam ID : PF01868

PFam Domain Description : Domain of unknown function UPF0086

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 238

Average sequence length: 88.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01868	D8Q4T9_SCHCM_107_225	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01868	D8Q4T9_SCHCM_107_225	100

Sequence based PCA Plot of the family - PF01868 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=40 Length=8
Motif3 Start=61 Length=8
Motif4 Start=19 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay