3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01867

Details:

PFam ID : PF01867

PFam Domain Description : CRISPR associated protein Cas1

Number of Sequence in 50% Dataset : 287

Number of Sequence in Full Dataset : 1229

Average sequence length: 226.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01867	C4ZJY3_THASP_130_256	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01867	C0A724_9BACT_319_647	100

Sequence based PCA Plot of the family - PF01867 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay