3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01856

Details:

PFam ID : PF01856

PFam Domain Description : Helicobacter outer membrane protein

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 213

Average sequence length: 150.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01856	C3XDL0_9HELI_185_325	71.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01856	E7A9A1_HELFC_60_221	99.5

Sequence based PCA Plot of the family - PF01856 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=112 Length=8
Motif3 Start=5 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay