3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01853

Details:

PFam ID : PF01853

PFam Domain Description : MOZ/SAS family

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 355

Average sequence length: 171.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01853	A4RDR8_MAGO7_413_520	74.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01853	C6LNH5_GIAIB_247_378	100

Sequence based PCA Plot of the family - PF01853 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=71 Length=8
Motif2 Start=28 Length=11
Motif3 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay