3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01849

Details:

PFam ID : PF01849

PFam Domain Description : NAC domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 324

Average sequence length: 57.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01849	E0SR18_IGNAA_6_68	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01849	D8M722_BLAHO_53_110	96.5

Sequence based PCA Plot of the family - PF01849 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=11
Motif2 Start=17 Length=8
Motif3 Start=33 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay