3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01847

Details:

PFam ID : PF01847

PFam Domain Description : von Hippel-Lindau disease tumour suppressor protein

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 61

Average sequence length: 110.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01847	D6WSX4_TRICA_25_191	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01847	VHLL_HUMAN_40_138	100

Sequence based PCA Plot of the family - PF01847 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay