3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01845

Details:

PFam ID : PF01845

PFam Domain Description : CcdB protein

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 101

Average sequence length: 94.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01845	B3HKG8_ECOLX_15_92	73.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01845	E5YK51_9ENTR_2_106	100

Sequence based PCA Plot of the family - PF01845 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=70 Length=8
Motif2 Start=6 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay