3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01843

Details:

PFam ID : PF01843

PFam Domain Description : DIL domain

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 250

Average sequence length: 95.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01843	Q6AVV2_ORYSJ_1334_1388	18.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01843	D2V3K3_NAEGR_652_768	100

Sequence based PCA Plot of the family - PF01843 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=33
Motif2 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay