3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01842

Details:

PFam ID : PF01842

PFam Domain Description : ACT domain

Number of Sequence in 50% Dataset : 416

Number of Sequence in Full Dataset : 6312

Average sequence length: 63.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01842	E6N7F4_9ARCH_24_77	81.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01842	D6ZDA0_SEGRD_366_408	98.2

Sequence based PCA Plot of the family - PF01842 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=31 Length=8
Motif3 Start=22 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay