3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01841

Details:

PFam ID : PF01841

PFam Domain Description : Transglutaminase-like superfamily

Number of Sequence in 50% Dataset : 526

Number of Sequence in Full Dataset : 3005

Average sequence length: 110.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01841	O27119_METTH_91_190	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01841	Q4MW20_BACCE_2_97	99.9

Sequence based PCA Plot of the family - PF01841 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=11
Motif2 Start=47 Length=8
Motif3 Start=81 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay