3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01839

Details:

PFam ID : PF01839

PFam Domain Description : FG-GAP repeat

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 1159

Average sequence length: 38.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01839	F2B083_RHOBA_19_66	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01839	C9Z5H5_STRSW_161_206	98.1

Sequence based PCA Plot of the family - PF01839 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay