3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01837

Details:

PFam ID : PF01837

PFam Domain Description : Domain of unknown function DUF39

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 137

Average sequence length: 352.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01837	A2SQS0_METLZ_16_408	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01837	A2SQS0_METLZ_16_408	100

Sequence based PCA Plot of the family - PF01837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=173 Length=14
Motif2 Start=250 Length=8
Motif3 Start=137 Length=8
Motif4 Start=333 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay