3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01833

Details:

PFam ID : PF01833

PFam Domain Description : IPT/TIG domain

Number of Sequence in 50% Dataset : 1563

Number of Sequence in Full Dataset : 3243

Average sequence length: 85.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01833	A8E7R5_DANRE_1147_1302	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01833	D7G8T0_ECTSI_296_385	98.8

Sequence based PCA Plot of the family - PF01833 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay