3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01832

Details:

PFam ID : PF01832

PFam Domain Description : Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 1229

Average sequence length: 132.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01832	Q03BN4_LACC3_82_151	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01832	Q03BN4_LACC3_82_151	99.9

Sequence based PCA Plot of the family - PF01832 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay