3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01827

Details:

PFam ID : PF01827

PFam Domain Description : FTH domain

Number of Sequence in 50% Dataset : 522

Number of Sequence in Full Dataset : 847

Average sequence length: 138.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01827	A8Y2M2_CAEBR_249_373	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01827	E3MZ35_CAERE_96_280	100

Sequence based PCA Plot of the family - PF01827 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=84 Length=8
Motif2 Start=96 Length=8
Motif3 Start=17 Length=11
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay