3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01826

Details:

PFam ID : PF01826

PFam Domain Description : Trypsin Inhibitor like cysteine rich domain

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 1002

Average sequence length: 56.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01826	F1NN57_CHICK_518_552	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01826	A7USV5_ANOGA_22_94	97.0

Sequence based PCA Plot of the family - PF01826 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=48 Length=20
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay