3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01825

Details:

PFam ID : PF01825

PFam Domain Description : Latrophilin/CL-1-like GPS domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 575

Average sequence length: 45.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01825	B0WWV0_CULQU_360_409	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01825	F2U194_9EUKA_327_368	100

Sequence based PCA Plot of the family - PF01825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=41 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay