3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01824

Details:

PFam ID : PF01824

PFam Domain Description : MatK/TrnK amino terminal region

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 2447

Average sequence length: 257.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01824	D2JY31_9MONI_1_159	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01824	D7U8H7_VITVI_1_60	100

Sequence based PCA Plot of the family - PF01824 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=56 Length=20
Motif2 Start=13 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay