3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01823

Details:

PFam ID : PF01823

PFam Domain Description : MAC/Perforin domain

Number of Sequence in 50% Dataset : 198

Number of Sequence in Full Dataset : 482

Average sequence length: 200.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01823	A7XLX2_PERFV_151_330	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01823	Q23MJ4_TETTH_119_326	99.7

Sequence based PCA Plot of the family - PF01823 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=188 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay