3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01820

Details:

PFam ID : PF01820

PFam Domain Description : D-ala D-ala ligase N-terminus

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 2073

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01820	D5MI58_9BACT_6_178	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01820	C1MLG7_MICPC_461_620	100

Sequence based PCA Plot of the family - PF01820 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=154 Length=20
Motif2 Start=7 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay