3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01817

Details:

PFam ID : PF01817

PFam Domain Description : Chorismate mutase type II

Number of Sequence in 50% Dataset : 226

Number of Sequence in Full Dataset : 1489

Average sequence length: 77.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01817	B0NB59_EUBSP_8_72	73.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01817	D1JFB1_9ARCH_57_142	95.9

Sequence based PCA Plot of the family - PF01817 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay