3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01816

Details:

PFam ID : PF01816

PFam Domain Description : Leucine rich repeat variant

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 125

Average sequence length: 25.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01816	B1Y749_LEPCP_193_215	51.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01816	B5HAL5_STRPR_436_461	85

Sequence based PCA Plot of the family - PF01816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay