3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01814

Details:

PFam ID : PF01814

PFam Domain Description : Hemerythrin HHE cation binding domain

Number of Sequence in 50% Dataset : 879

Number of Sequence in Full Dataset : 2413

Average sequence length: 126.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01814	E6PGR7_9ZZZZ_2_61	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01814	Q5P6M1_AROAE_75_195	98.3

Sequence based PCA Plot of the family - PF01814 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay