3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01813

Details:

PFam ID : PF01813

PFam Domain Description : ATP synthase subunit D

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 462

Average sequence length: 186.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01813	C6LYH1_GIAIB_13_235	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01813	E8WP16_GEOS8_7_203	100

Sequence based PCA Plot of the family - PF01813 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=8
Motif3 Start=91 Length=8
Motif4 Start=206 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay