3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01812

Details:

PFam ID : PF01812

PFam Domain Description : 5-formyltetrahydrofolate cyclo-ligase family

Number of Sequence in 50% Dataset : 535

Number of Sequence in Full Dataset : 1621

Average sequence length: 177.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01812	F0HQJ9_9ACTN_33_306	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01812	B4FCL9_MAIZE_1_45	100

Sequence based PCA Plot of the family - PF01812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=61 Length=8
Motif2 Start=282 Length=8
Motif3 Start=252 Length=8
Motif4 Start=225 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay