3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01810

Details:

PFam ID : PF01810

PFam Domain Description : LysE type translocator

Number of Sequence in 50% Dataset : 840

Number of Sequence in Full Dataset : 4018

Average sequence length: 188.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01810	B2GJ36_KOCRD_14_285	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01810	A8UQ77_9FLAO_13_94	99.9

Sequence based PCA Plot of the family - PF01810 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay