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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01809
Details:

PFam ID : PF01809

PFam Domain Description : Haemolytic domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 1074

Average sequence length: 66.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01809B9TDU0_RICCO_2_7021.4
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01809D9PJI6_9ZZZZ_32_11299.7
Sequence based PCA Plot of the family - PF01809 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=19
Motif2 Start=33 Length=8
Motif3 Start=58 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay