3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01808

Details:

PFam ID : PF01808

PFam Domain Description : AICARFT/IMPCHase bienzyme

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 1296

Average sequence length: 286.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01808	D0YT74_9ACTO_146_271	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01808	E4M2Q8_9FIRM_325_461	100

Sequence based PCA Plot of the family - PF01808 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=58 Length=8
Motif3 Start=91 Length=8
Motif4 Start=22 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay