3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01807

Details:

PFam ID : PF01807

PFam Domain Description : CHC2 zinc finger

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 1485

Average sequence length: 95.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01807	C3IT65_BACTU_13_121	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01807	C3IT65_BACTU_13_121	99.9

Sequence based PCA Plot of the family - PF01807 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=21 Length=27
Motif2 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay