3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01802

Details:

PFam ID : PF01802

PFam Domain Description : Herpesvirus VP23 like capsid protein

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 49

Average sequence length: 256.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01802	E9M5K9_9GAMA_18_315	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01802	Q5Y958_9ALPH_9_324	100

Sequence based PCA Plot of the family - PF01802 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=23 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay