3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01799

Details:

PFam ID : PF01799

PFam Domain Description : 2Fe-2S iron-sulfur cluster binding domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 2084

Average sequence length: 75.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01799	E3NNM1_CAERE_109_146	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01799	Q2LGX1_9EURY_78_120	99.4

Sequence based PCA Plot of the family - PF01799 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=8
Motif3 Start=60 Length=20
Motif4 Start=25 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay