3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01797

Details:

PFam ID : PF01797

PFam Domain Description : Transposase IS200 like

Number of Sequence in 50% Dataset : 293

Number of Sequence in Full Dataset : 1690

Average sequence length: 102.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01797	Q7UVL1_RHOBA_5_61	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01797	C0EI17_9CLOT_2_64	98.9

Sequence based PCA Plot of the family - PF01797 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay