3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01796

Details:

PFam ID : PF01796

PFam Domain Description : DUF35 OB-fold domain

Number of Sequence in 50% Dataset : 117

Number of Sequence in Full Dataset : 808

Average sequence length: 65.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01796	C1B6B2_RHOOB_64_124	40.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01796	B8R8R7_9BACT_62_144	100

Sequence based PCA Plot of the family - PF01796 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=17
Motif2 Start=53 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay