3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01794

Details:

PFam ID : PF01794

PFam Domain Description : Ferritin-like domain

Number of Sequence in 50% Dataset : 331

Number of Sequence in Full Dataset : 1633

Average sequence length: 127.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01794	A4QR68_MAGO7_74_222	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01794	E3QPU2_COLGM_184_270	95.1

Sequence based PCA Plot of the family - PF01794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay