3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01793

Details:

PFam ID : PF01793

PFam Domain Description : Glycolipid 2-alpha-mannosyltransferase

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 325

Average sequence length: 294.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01793	C8ZIX7_YEAS8_48_396	75.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01793	C8ZIX7_YEAS8_48_396	100

Sequence based PCA Plot of the family - PF01793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=182 Length=8
Motif3 Start=152 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay