3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01791

Details:

PFam ID : PF01791

PFam Domain Description : DeoC/LacD family aldolase

Number of Sequence in 50% Dataset : 139

Number of Sequence in Full Dataset : 1679

Average sequence length: 217.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01791	E4SU22_STRTN_1_69	77.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01791	E2FYU6_9RICK_2_136	98.8

Sequence based PCA Plot of the family - PF01791 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=157 Length=11
Motif2 Start=129 Length=11
Motif3 Start=64 Length=8
Motif4 Start=199 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay