3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01786

Details:

PFam ID : PF01786

PFam Domain Description : Alternative oxidase

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 307

Average sequence length: 189.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01786	A1DRE8_CRYPV_87_187	83.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01786	B4FWX0_MAIZE_85_196	100

Sequence based PCA Plot of the family - PF01786 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay