3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01784

Details:

PFam ID : PF01784

PFam Domain Description : NIF3 (NGG1p interacting factor 3)

Number of Sequence in 50% Dataset : 266

Number of Sequence in Full Dataset : 1278

Average sequence length: 257.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01784	C3RQD4_9FIRM_1_157	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01784	D0LXK0_HALO1_5_371	100

Sequence based PCA Plot of the family - PF01784 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay