3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01774

Details:

PFam ID : PF01774

PFam Domain Description : UreD urease accessory protein

Number of Sequence in 50% Dataset : 173

Number of Sequence in Full Dataset : 563

Average sequence length: 208.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01774	A2X1F7_ORYSI_47_118	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01774	B8BRD4_THAPS_26_338	100

Sequence based PCA Plot of the family - PF01774 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=33 Length=17
Motif2 Start=8 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay