3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01773

Details:

PFam ID : PF01773

PFam Domain Description : Na+ dependent nucleoside transporter N-terminus

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 607

Average sequence length: 74.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01773	D0ME74_RHOM4_11_95	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01773	D0ME74_RHOM4_11_95	100

Sequence based PCA Plot of the family - PF01773 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=8
Motif2 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay