3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01771

Details:

PFam ID : PF01771

PFam Domain Description : Herpesvirus alkaline exonuclease

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 109

Average sequence length: 288.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01771	D7EJ43_TRICA_6_187	67.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01771	O39290_9ALPH_73_559	100

Sequence based PCA Plot of the family - PF01771 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=123 Length=8
Motif3 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay