3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01768

Details:

PFam ID : PF01768

PFam Domain Description : Birnavirus VP4 protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 14

Average sequence length: 148.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01768	Q990P7_9VIRU_455_706	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01768	B2D2U7_IBDV_454_722	100

Sequence based PCA Plot of the family - PF01768 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=247 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay